miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|159659060|gb|EY128766.1|EY128766 TTTTTTTTTTTTTTTTTTTGTGCGAAAATTCCTTTTTATAGCAGAAGGTGGGGAAAAAAGGACATGAGAAGAAAACAAAA
GAAATAAATAAATAGATATAAAATGCATGGATCATGAAGGTCTGATGAGATGGTGGATCCCATTACTGTGCACCCAATTT
TGTTGTGGTGTTGTTAATGATATCTGCGGAGGTTGTGGGAATCCTGATGATGCTGCTGCAGCATTGGCTAACAATCGACG
GTCATGATTCATTTGTTGCCACTGTTGTTGTTCTCCATTTCTTGACACGTCATCTCCTCCTCCCGGAAATTGATGACTTT
GATAATTATGTGAGTTAAATGGTAGCCTGTTAAACATTTGAAGCATGTGGGGTTCATTTGTTTGCTTGACTTGTCCAAAC
CTATGTTGCTGCTGCATTTCATCTCTTCTTTCAGGCTGCCGGAAATTCAACTCAGGTCTTAATCCTTGGCGTCTCCAATC
ACCACTAAATTGTGTTGAGAAAGAATTTCTTTGTTGTGAAGCTGAGTTTCCCAAACTTAGGTCCAAATTGTGGTCTGATG
ATGATGCATTGTTTGAAGACTCTGCGGCTTTTAGTTCATCATCATAAATGGATGGATCAAAATTGGTAACAGCTTCCTTG
CCATTACATTTTATGGCGGCTTTATCATATGCCCTGGCAGCTTCAACTTCAGTATCAAACAAACCCAAATAAACATACTT
TTTGCCCAAGAATTGGCCCATCC




Most similar to sp|P47927|AP2_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P47927|AP2_ARATH Floral homeotic protein APETALA 2
           OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1
          Length = 432

 Score =  117 bits (292), Expect = 1e-25
 Identities = 89/216 (41%), Positives = 112/216 (51%), Gaps = 7/216 (3%)
 Frame = -3

Query: 741 MGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFDPSIYDDELKAAEXXXXXX 562
           MGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGK+AVTNFDPSIYD+EL A        
Sbjct: 239 MGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKDAVTNFDPSIYDEELNAESSGNPTT 298

Query: 561 XXXXXXXXXXXXSASQQRNSFSTQFSGDWRRQGLRPELNFRQPERRDEMQQQHRFGQVKQ 382
                       SA+ +  S           Q +R  +N +Q   +D +      G + Q
Sbjct: 299 PQDHNLDLSLGNSANSKHKS-----------QDMRLRMNQQQ---QDSLHSNEVLG-LGQ 343

Query: 381 TNEPHMLQMFNRLPFNSHNY--QSHQFPGGGDDVSRNGEQQQWQQMNHDRRLLXXXXXAS 208
           T       M N  P ++H +   S+   GGG  +    E  ++       ++L     AS
Sbjct: 344 TG------MLNHTPNSNHQFPGSSNIGSGGGFSLFPAAENHRFDGRASTNQVL-TNAAAS 396

Query: 207 SGFP--QPPQI--SLTTPQQNWVHSNGIH-HLIRPS 115
           SGF      QI  S +TP QNW+ +NG    L+RPS
Sbjct: 397 SGFSPHHHNQIFNSTSTPHQNWLQTNGFQPPLMRPS 432